Description

Centromere HOR annotation.

Methods

Iterative procedure takes AS annotation as input and searches for HOR variant that maximizes AS annotation collapsing on each step.

Display Conventions and Configuration

  1. Each HOR variant is painted in its own color.
  2. Canonical HOR is refered by its name: S3CXH1L, S2C8H1L, etc.
  3. HOR variants are represented by the name of canonical HOR and the list of alpha-satellites it contains:
    1. HOR variant S2C8H1L_5-11 consists of alpha-satellites 5 to 11 from canonical HOR S2C8H1L.
    2. HOR variant S3CXH1L_1-11_7-12 consits of alpha-satelliets 1 to 11 and 7 to 12 from canonical HOR S3CXH1L.
  4. Reverse complement HOR variants are represented as follows:
    1. HOR variant S2C8H1L_11-5' is reverse complement to S2C8H1L_5-11.
    2. HOR variant S3CXH1L_12-7'_11-1' is reverse complement to S3CXH1L_1-11_7-12.

Data access

Release history

  1. 2020-06-10: Initial upload for 20200602 release. Script commit (679a4e3).
  2. 2020-06-23: Updated
  3. 2020-06-24: 20200611 uploaded
  4. 2020-06-27: updated

Contacts

Credits