RepeatMasker track updated as of March 31, 2021
RepeatMasker version 4.1.1
Search Engine: rmblast
RepeatMasker Database: Dfam
RepeatMasker with Dfam
Polished with modified overlap resolution pipeline
Color is based on repeat name or family:
| Repeat | Color | Repeat | Color |
|---|---|---|---|
| (CATTC)n | (GAATC)n | ||
| ALR/Alpha | BSR/Beta | ||
| CER | DNA | ||
| GSAT | HSAT | ||
| LINE | Low_complexity | ||
| LSAU | LTR | ||
| RC/Helitron | Retroposon | ||
| RNA | rRNA | ||
| SAR | Satellite/acro | ||
| Satellite/telo | SATR1 | ||
| scRNA | Simple repeat | ||
| SINE | snRNA | ||
| srpRNA | SSTI | ||
| SUBTEL_sa | tRNA | ||
| Novel | Unknown |
Savannah Hoyt
Jessica Storer
Thanks to Arian Smit, Robert Hubley, and the Dfam project for providing the tools and models used to generate this track.