Description
Transcript-level expression estimates (CHM13).
Methods
TPM estimated using Salmon 1.3.0, CHM13 polyA RNA-seq (2 replicates combined), CHM13 v1.0 assembly, and CAT v1 annotation.
Display Conventions and Configuration
Colored according to log2(TPM) in the following intervals:
- Dark blue: (-23.3,-17.3]
- Medium blue: (-17.3,-11.4]
- Light blue: (-11.4,-5.45]
- Gray: (-5.45,0.479]
- Light red: (0.479,6.41]
- Medium red: (6.41,12.3]
- Red: (12.3,18.3]
The value of each feature corresponds to the raw TPM, rounded to the nearest integer and truncated at 1000 (BED convention).
Data access
Transcript- and gene-level TPM tables can be found on Globus here:
9db1f0a6-a05a-11ea-8f06-0a21f750d19b:team-epigenetics/chm13_rnaseq/salmon_quant/chm13.CATv1.quant.sf
9db1f0a6-a05a-11ea-8f06-0a21f750d19b:team-epigenetics/chm13_rnaseq/salmon_quant/chm13.CATv1.gene.tsv
Release history
- 6 January 2021: track created
Contacts
Credits
Raw data generated at UC Davis (Megan Dennis Lab).