Description
Transcript-level expression estimates (CHM13).
Methods
TPM estimated using Salmon 1.3.0, CHM13 polyA RNA-seq (2 replicates combined), CHM13 v1.0 assembly, and CAT v4 + liftOff annotation.
Display Conventions and Configuration
Colored according to log2(TPM + 1e-6) in the following intervals:
- Dark blue: (-19.97,-14.54]
- Medium blue: (-14.54,-9.15]
- Light blue: (-9.15,-3.76]
- Gray: (-3.76,1.63]
- Light red: (1.63,7.02]
- Medium red: (7.02,12.41]
- Red: (12.41,17.84]
The value of each feature corresponds to the raw TPM, rounded to the nearest integer and truncated at 1000 (BED convention).
Data access
Transcript- and gene-level TPM tables can be found on Globus here:
9db1f0a6-a05a-11ea-8f06-0a21f750d19b:team-epigenetics/chm13_rnaseq/salmon_quant/CHM13.CATv4.quant.sf
9db1f0a6-a05a-11ea-8f06-0a21f750d19b:team-epigenetics/chm13_rnaseq/CHM13.CATv4.allTPM.tsv
Release history
- 21 May 2021: track created
Contacts
Credits
Raw data generated at UC Davis (Megan Dennis Lab).