include annotation.txt


track cactusV1.0
compositeTrack on
shortLabel Cactus V1.0
longLabel Cactus t2t-chm13-v1.0 Alignment Tracks
group compGeno
subGroup1 view Track_Type Snake=Alignments
subGroup2 orgs Organisms t2t-chm13-v1.0=t2t-chm13-v1.0 GRCh38=GRCh38
dragAndDrop subTracks
dimensions dimensionX=view dimensionY=orgs
noInherit on
priority 0
centerLabelsDense on
visibility hide
type bigBed 3
html needTrackDescription.html

    track cactusV1.0Alignments
    shortLabel Alignments
    view Alignments
    visibility full
    subTrack cactusV1.0
    html needTrackDescription.html

        track snakechm13-v1.0
        longLabel T2T chm13 v1.0
        shortLabel T2T chm13 v1.0
        otherSpecies t2t-chm13-v1.0
        visibility full
        parent cactusV1.0Alignments off
        priority 3
        bigDataUrl ../t2t-chm13-v1.0/cactus/t2t-chm13-v1.0.aln1.hal
        type halSnake
        group compGeno
        subGroups view=Snake orgs=t2t-chm13-v1.0
        html needTrackDescription.html

        track snakeGRCh38V1.0
        longLabel GRCh38
        shortLabel GRCh38
        otherSpecies GRCh38
        visibility hide
        parent cactusV1.0Alignments off
        priority 3
        bigDataUrl ../t2t-chm13-v1.0/cactus/t2t-chm13-v1.0.aln1.hal
        type halSnake
        group compGeno
        subGroups view=Snake orgs=GRCh38
        html needTrackDescription.html


track cactusV1.1
compositeTrack on
shortLabel Cactus V1.1
longLabel Cactus t2t-chm13-v1.1 Alignment Tracks
group compGeno
subGroup1 view Track_Type Snake=Alignments
subGroup2 orgs Organisms t2t-chm13-v1.1=t2t-chm13-v1.1 GRCh38=GRCh38
dragAndDrop subTracks
dimensions dimensionX=view dimensionY=orgs
noInherit on
priority 0
centerLabelsDense on
visibility hide
type bigBed 3
html needTrackDescription.html

    track cactusV1.1Alignments
    shortLabel Alignments
    view Alignments
    visibility full
    subTrack cactusV1.1
    html needTrackDescription.html

        track snakechm13-v1.1
        longLabel T2T chm13 v1.1
        shortLabel T2T chm13 v1.1
        otherSpecies t2t-chm13-v1.1
        visibility full
        parent cactusV1.1Alignments off
        priority 3
        bigDataUrl ../t2t-chm13-v1.1/cactus/t2t-chm13-v1.1.hal
        type halSnake
        group compGeno
        subGroups view=Snake orgs=t2t-chm13-v1.1
        html needTrackDescription.html

        track snakeGRCh38V1.1
        longLabel GRCh38 V1.1
        shortLabel GRCh38 V1.1
        otherSpecies GRCh38
        visibility hide
        parent cactusV1.1Alignments off
        priority 3
        bigDataUrl ../t2t-chm13-v1.1/cactus/t2t-chm13-v1.1.hal
        type halSnake
        group compGeno
        subGroups view=Snake orgs=GRCh38
        html needTrackDescription.html