Description

HG002 Cut and Run low salt only BWA-F3852 alignments and Meryl unique k-mer filtering from the DEC 2020 and FEB 2021 runs

Methods

The Cut and Run experiments were done on HG002 cells and sequenced for 150bp paired-end reads.

Reads were trimmed and filtered (q20) before mapped to chm13_HG002X_HG38Y.fasta with bwa mem -k 50 -c 1000000 and samtools filtered (F3852)

losalt mapped reads were then filtered through unique 51mers (including chm13 (minus chrX) + hg002 (chrX only) + no chrY)

Display Conventions and Configuration

Data access

Release history

1. chm13 autosomes + hg002 chrX + hg38 chrY (chm13_HG002X_HG38Y.fasta)

Contacts

• Savannah Hoyt <savannah.klein@uconn.edu>
• Karen Miga <khmiga@ucsc.edu>

Credits

Gina Caldas & Nick Altemose (Cut & Run experiments)

Karen Miga (mapping and Samtools filtering)

Savannah Hoyt; Rachel O'Neill (k-mer filtering)

Arang Rhie (Meryl software; unique 51mers)