##
# varRep
##
track rmsk
shortLabel RepeatMasker
longLabel Repeating Elements by RepeatMasker
group varRep
visibility hide
itemRgb on
maxItems 1000000
maxWindowToDraw 100000000
type bigBed 9 +
bigDataUrl rmsk/rmsk.bigBed
priority 1

track simpleRepeat
shortLabel Simple Repeats
longLabel Simple Tandem Repeats by TRF
group varRep
visibility hide
type bigBed 4 +
bigDataUrl trf/trf.bigBed
priority 2

track sedefSegDups
compositeTrack off
shortLabel SEDEF Segmental Dups
longLabel SEDEF Segmental Duplications
priority 10
group varRep
type bigBed 9 35
visibility hide
itemRgb on
maxItems 100000
bigDataUrl sedefSegDups/sedefSegDups.bigBed


include prelimChains.trackDb.txt
include as_annotation.trackDb.txt