Description

New Satellite track for CHM13v1.1

All new satellite loci are shown as a single block: start-end of the entire array or lone monomer

Methods

Identification and annotation of new satellites was accomplished through a combination of RepeatModeler2.01, RepeatMasker(p4.1.2-p1) and manual curation as described in Hoyt et al. 2021

Display Conventions and Configuration

Data access

http://t2t.gi.ucsc.edu/chm13/dev/t2t-chm13-v1.1/downloads/t2t-chm13-v1.1.new-satellites-monomers-arrays.bed.gz

Release history

  1. CHM13 v1.1 release

Contacts

Credits

Savannah Hoyt

Jessica Storer

Patrick Grady

Gabrielle Hartley

Rachel O'Neill

Thanks to Arian Smit, Robert Hubley, and the Dfam project for providing the tools which assisted in the generation of this track.