RepeatMasker track updated as of May 31, 2021
RepeatMasker version 4.1.1
Search Engine: rmblast
RepeatMasker Database: Dfam
RepeatMasker with Dfam
Polished with modified overlap resolution pipeline
Color is based on repeat name or family:
Repeat | Color | Repeat | Color |
---|---|---|---|
(CATTC)n | (GAATC)n | ||
ALR/Alpha | BSR/Beta | ||
CER | DNA | ||
GSAT | HSAT | ||
LINE | Low_complexity | ||
LSAU | LTR | ||
RC/Helitron | Retroposon | ||
RNA | rRNA | ||
SAR | Satellite/acro | ||
Satellite/telo | SATR1 | ||
scRNA | Simple repeat | ||
SINE | snRNA | ||
srpRNA | SSTI | ||
SUBTEL_sa | tRNA | ||
Novel | Unknown |
Savannah Hoyt
Jessica Storer
Thanks to Arian Smit, Robert Hubley, and the Dfam project for providing the tools and models used to generate this track.