Description

RepeatMasker track updated as of May 31, 2021

RepeatMasker version 4.1.1

Search Engine: rmblast

RepeatMasker Database: Dfam

Methods

RepeatMasker with Dfam

Polished with modified overlap resolution pipeline

Display Conventions and Configuration

Color is based on repeat name or family:

RepeatColorRepeatColor
(CATTC)n (GAATC)n
ALR/Alpha BSR/Beta
CER DNA
GSAT HSAT
LINE Low_complexity
LSAU LTR
RC/Helitron Retroposon
RNA rRNA
SAR Satellite/acro
Satellite/telo SATR1
scRNA Simple repeat
SINE snRNA
srpRNA SSTI
SUBTEL_sa tRNA
Novel Unknown

Data access

Release history

  1. 2020-09-22: CHM13 v1.0 release (chm13.draft_v1.0.fasta)

Contacts

Credits

Savannah Hoyt

Jessica Storer

Thanks to Arian Smit, Robert Hubley, and the Dfam project for providing the tools and models used to generate this track.