Description

Synteny annotations relative to GRCh38 produce from the Cactus alignments.

Methods

These are build the Cactus HAL file with 25 kilobase and 1 megabase resolution. The 25kb track uses a maximum anchor distance of 25kb, while the 1 megabase track uses a 50kb block size.

Display Conventions and Configuration

These are alignment tracks using the PSL display conventions

Data access

Release history

1. 2020-09-04 for 20200727

Contacts

• Mark Diekhans <markd@ucsc.edu>

Credits

Krasheninnikova K, Diekhans M, Armstrong J, Dievskii A, Paten B, O'Brien S. halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments. Gigascience. 2020;9(6):giaa047. PMID: 32463100 PMCID: PMC7254927 DOI: 10.1093/gigascience/giaa047