track validation
shortLabel Validation
longLabel Validation of T2T assembly
superTrack on show
group map
priority 3.5

    track issues
    parent validation
    shortLabel Issues
    longLabel Issues from read low-coverage
    group map
    visibility dense
    itemRgb on
    maxItems 100000
    type bigBed 9
    bigDataUrl issues/issues.bigBed 
    priority 1.0

    track merfinKmerHiFi
    parent validation
    shortLabel HiFi 21-mers 
    longLabel  HiFi 21-mers generated with Merfin
    group map
    visibility hide
    type bigWig
    bigDataUrl merfinKmer/chm13_v1.1.merfin.hifi.bw
    priority 2.0

    track merfinKmerIllumina
    parent validation
    shortLabel Illumina 21-mers 
    longLabel  Illumina 21-mers generated with Merfin
    group map
    visibility hide
    type bigWig
    bigDataUrl merfinKmer/chm13.v1.1.merfin.illumina.bw
    priority 3.0


    track readCoverageHiFi
    container multiWig
    noInherit on
    parent validation
    shortLabel HiFi coverage
    longLabel HiFi read coverage
    aggregate transparentOverlay
    type bigWig
    showSubtrackColorOnUi on
    maxHeightPixels 70:70:8
    visibility hide
    priority 4.0
    group map
    html readCoverage.html

        track readCoverageHiFiPri
        parent readCoverageHiFi
        bigDataUrl readCoverage/hifi.pri.cov.bigWig
        shortLabel HiFi Pri coverage
        longLabel HiFi Primary read coverage
        color 255,182,193
        type bigWig 0 70
        maxHeightPixels 70:70:8
        visibility hide
        priority 4.1
        group map
        html readCoverage.html

        track readCoverageHiFiMarker
        parent readCoverageHiFi
        bigDataUrl readCoverage/hifi.markersandlength.cov.bigWig
        shortLabel HiFi marker assist coverage
        longLabel  HiFi marker assisted read coverage
        color 240,128,128
        type bigWig 0 70
        maxHeightPixels 70:70:8
        visibility hide
        priority 4.2
        group map
        html readCoverage.html

    track readCoverageONT
    container multiWig
    noInherit on
    parent validation
    shortLabel ONT coverage
    longLabel  ONT read coverage
    aggregate transparentOverlay
    showSubtrackColorOnUi on
    type bigWig
    maxHeightPixels 200:200:8
    visibility hide
    priority 5.0
    group map
    html readCoverage.html

        track readCoverageONTPri
        parent readCoverageONT
        bigDataUrl readCoverage/ont.pri.len1k_idy85.cov.bigWig
        shortLabel ONT Pri coverage
        longLabel  ONT Primary read coverage
        color 173,216,230
        type bigWig 0 200
        maxHeightPixels 70:200:8
        visibility hide
        priority 5.1
        group map
        html readCoverage.html

        track readCoverageONTMarker
        parent readCoverageONT
        bigDataUrl readCoverage/ont.markersandlength.cov.bigWig
        shortLabel ONT marker assist coverage
        longLabel  ONT marker assisted read coverage
        color 100,149,237
        type bigWig 0 200
        maxHeightPixels 70:200:8
        visibility hide
        priority 5.2
        group map
        html readCoverage.html