DeepVariant on PCRfree
The DeepVariant calling of mapped BAM were perform using Docker image /google/deepvariant:0.10.0 and command opt/deepvariant/bin/run_deepvariant --model_type=WGS --ref=t2t-chm13.20200727.fasta --reads=CHM13_markdup.bam --output_vcf=out.vcf.gz --num_shards=36
Data is available on globus: team-curation/alignments/20200727/PCRfree/deepvariant.vcf.gz
Contact Arkarachai Fungtammasan <chai@dnanexus.com>