Description

This track shows regions that have no GRCh38 LASTZ Liftover alignment chains (GRCh38 LASTZ Liftover Alignment Chains track).

Methods

Base-wise negation of LAST liftover alignment chains using featureBits.

Display Conventions and Configuration

Data access

Release history

1. 2020-09-06 - t2tChm13_20200727

Contacts

• Mark Diekhans <markd@ucsc.edu>

Credits

Chain/Net:

Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D. Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9. PMID: 14500911; PMC: PMC208784

Lastz:

Harris RS. Improved pairwise alignment of genomic DNA. Ph.D. Thesis. Pennsylvania State University, USA. 2007.

Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W. Human-mouse alignments with BLASTZ. Genome Res. 2003 Jan;13(1):103-7. PMID: 12529312; PMC: PMC430961