Description

A track showing segmental duplications as generated by sedef on the assembly: t2t-chm13.20200727. Column descriptions can be found here: columns.

Methods

Sedef was run with default parameters on a RepeatMasked genome assembly. The resulting output (final.bed) was then converted into a browser friendly format (bed9 + extra fields).

Display Conventions and Configuration

Purple: less than 90% similarity
Light to dark gray: 90 - 98% similarity
Yellow: 98 - 99% similarity
Orange: greater than 99% similarity

Data access

Release history

  1. 2020/07/29, annotation for t2t-chm13.20200727.
  2. 2020/09/08, annotation for t2t-chm13.20200727.

Contact

Contact Mitchell R. Vollger <mvollger@uw.edu>

Credits

sedef: Fast Characterization of Segmental Duplications in Genome Assemblies (PMC6129265)