Description

Winnowmap - Nanopore All (guppy 3.6.0) variant calls

Methods

Input reads: ONT reads (rel5 data + additional UW reads)
Mapper: Winnowmap v1.1 (-ax map-ont), commit: 91aac0
SV caller: Sniffles 1.0.11 (-s 3)
This track includes SV calls except low confidence SVs (with 0/0 genotype, filter suggested by Michael Alonge)

Display Conventions and Configuration

Data access

Data is available on globus: team-curation/alignments/20200727/ONT/rel5_all_include_uw/output.filtered.sniffles.vcf

Release history

1. 2020 Aug 1: Upload for 20200727 release
2. 2020 June 9 : Initial upload for 20200602 release

Contact

Contact Chirag Jain<chirag.jain@nih.gov>

Credits